Raphael Gottardo: search on Z-Library

The world's largest scientific articles store. 70,000,000+ articles for free.

1

Safety and immunogenicity of a mRNA rabies vaccine in healthy adults: an open-label, non-randomised, prospective, first-in-human phase 1 clinical trial

Alberer, Martin, Gnad-Vogt, Ulrike, Hong, Henoch Sangjoon, Mehr, Keyvan Tadjalli, Backert, Linus, Finak, Greg, Gottardo, Raphael, Bica, Mihai Alexandru, Garofano, Aurelio, Koch, Sven Dominik, Fotin-Ml

Journal:

Lancet (London, England)

Year:

2017

Language:

english

File:

PDF, 455 KB

english, 2017

2

Computational resources for high-dimensional immune analysis from the Human Immunology Project Consortium

Brusic, Vladimir, Gottardo, Raphael, Kleinstein, Steven H, Davis, Mark M, Davis, Mark M, Hafler, David A, Quill, Helen, Palucka, A Karolina, Poland, Gregory A, Pulendran, Bali, Reinherz, Ellis L, Stua

Journal:

Nature Biotechnology

Year:

2014

Language:

english

File:

PDF, 534 KB

english, 2014

3

Orchestrating high-throughput genomic analysis with Bioconductor

Huber, Wolfgang, Carey, Vincent J, Gentleman, Robert, Anders, Simon, Carlson, Marc, Carvalho, Benilton S, Bravo, Hector Corrada, Davis, Sean, Gatto, Laurent, Girke, Thomas, Gottardo, Raphael, Hahne, F

Journal:

Year:

2015

Language:

english

File:

PDF, 364 KB

english, 2015

4

Automated gating of flow cytometry data via robust model-based clustering

Kenneth Lo, Ryan Remy Brinkman, Raphael Gottardo

Journal:

Cytometry Part A

Year:

2008

Language:

english

File:

PDF, 574 KB

english, 2008

5

On-line changepoint detection and parameter estimation with application to genomic data

François Caron, Arnaud Doucet, Raphael Gottardo

Journal:

Statistics and Computing

Year:

2012

Language:

english

File:

PDF, 1.78 MB

english, 2012

6

Optimizing transformations for automated, high throughput analysis of flow cytometry data

Greg Finak, Juan-Manuel Perez, Andrew Weng, Raphael Gottardo

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 4.47 MB

english, 2010

7

The contribution of cell cycle to heterogeneity in single-cell RNA-seq data

McDavid, Andrew, Finak, Greg, Gottardo, Raphael

Journal:

Nature Biotechnology

Year:

2016

Language:

english

File:

PDF, 342 KB

english, 2016

8

DataPackageR: Reproducible data preprocessing, standardization and sharing using R/Bioconductor for collaborative data analysis

Finak, Greg, Mayer, Bryan, Fulp, William, Obrecht, Paul, Sato, Alicia, Chung, Eva, Holman, Drienna, Gottardo, Raphael

Journal:

Gates Open Research

Year:

2018

Language:

english

File:

PDF, 862 KB

english, 2018

9

PICS: Probabilistic Inference for ChIP-seq

Xuekui Zhang, Gordon Robertson, Martin Krzywinski, Kaida Ning, Arnaud Droit, Steven Jones, Raphael Gottardo

Journal:

Year:

2011

Language:

english

File:

PDF, 581 KB

english, 2011

10

Markov Chain Monte Carlo With Mixtures of Mutually Singular Distributions

Gottardo, Raphael, Raftery, Adrian E

Journal:

Journal of Computational and Graphical Statistics

Year:

2008

Language:

english

File:

PDF, 228 KB

english, 2008

11

Quality Control and Robust Estimation for cDNA Microarrays With Replicates

Gottardo, Raphael, Raftery, Adrian E, Yeung, Ka Yee, Bumgarner, Roger E

Journal:

Journal of the American Statistical Association

Year:

2006

Language:

english

File:

PDF, 545 KB

english, 2006

12

CytoML for cross‐platform cytometry data sharing

Finak, Greg, Jiang, Wenxin, Gottardo, Raphael

Journal:

Cytometry Part A

Year:

2018

Language:

english

File:

PDF, 1.63 MB

english, 2018

13

Graphical models for zero-inflated single cell gene expression

McDavid, Andrew, Gottardo, Raphael, Simon, Noah, Drton, Mathias

Journal:

The Annals of Applied Statistics

Year:

2019

Language:

english

File:

PDF, 3.76 MB

english, 2019

14

Characterization of two in vivo challenge models to measure functional activity of monoclonal antibodies to Plasmodium falciparum circumsporozoite protein

Raghunandan, Rama, Mayer, Bryan T., Flores-Garcia, Yevel, Gerber, Monica W., Gottardo, Raphael, Jhun, Hugo, Herrera, Sonia M., Perez-Ramos, Daniel W., Locke, Emily, King, C. Richter, Zavala, Fidel

Journal:

Malaria Journal

Year:

2020

Language:

english

File:

PDF, 3.48 MB

english, 2020

15

A Targeted Multi-omic Analysis Approach Measures Protein Expression and Low-Abundance Transcripts on the Single-Cell Level

Mair, Florian, Erickson, Jami R., Voillet, Valentin, Simoni, Yannick, Bi, Timothy, Tyznik, Aaron J., Martin, Jody, Gottardo, Raphael, Newell, Evan W., Prlic, Martin

Journal:

Year:

2020

File:

PDF, 7.32 MB

2020

16

Vaccine-induced Human Antibodies Specific for the Third Variable Region of HIV-1 gp120 Impose Immune Pressure on Infecting Viruses

Zolla-Pazner, Susan, Edlefsen, Paul T., Rolland, Morgane, Kong, Xiang-Peng, deCamp, Allan, Gottardo, Raphael, Williams, Constance, Tovanabutra, Sodsai, Sharpe-Cohen, Sandra, Mullins, James I., deSouza

Journal:

Year:

2014

Language:

english

File:

PDF, 1.12 MB

english, 2014

17

Motolimod Effectively Drives Immune Activation in Advanced Cancer Patients

Dietsch, Gregory N., Randall, Tressa D., Gottardo, Raphael, Northfelt, Donald W., Ramanathan, Ramesh K., Cohen, Peter A., Manjarrez, Kristi L., Newkirk, Mona, Bryan, James Kyle, Hershberg, Robert M.

Journal:

Year:

2016

Language:

english

File:

PDF, 2.56 MB

english, 2016

18

Panels of HIV-1 Subtype C Env Reference Strains for Standardized Neutralization Assessments

Hraber, Peter, Rademeyer, Cecilia, Williamson, Carolyn, Seaman, Michael S., Gottardo, Raphael, Tang, Haili, Greene, Kelli, Gao, Hongmei, LaBranche, Celia, Mascola, John R., Morris, Lynn, Montefiori, D

Journal:

Journal of Virology

Year:

2017

Language:

english

File:

PDF, 993 KB

english, 2017

19

Critical assessment of automated flow cytometry data analysis techniques

Aghaeepour, Nima, Finak, Greg, Hoos, Holger, Mosmann, Tim R, Brinkman, Ryan, Gottardo, Raphael, Scheuermann, Richard H

Journal:

Year:

2013

Language:

english

File:

PDF, 82 KB

english, 2013

20

An efficient computational approach for prior sensitivity analysis and cross-validation

Luke BORNN, Arnaud DOUCET and Raphael GOTTARDO

Journal:

Canadian Journal of Statistics

Year:

2010

Language:

english

File:

PDF, 1.58 MB

english, 2010

21

Combining Mixture Components for Clustering

Baudry, Jean-Patrick, Raftery, Adrian E., Celeux, Gilles, Lo, Kenneth, Gottardo, Raphaël

Journal:

Journal of Computational and Graphical Statistics

Year:

2010

Language:

english

File:

PDF, 1.92 MB

english, 2010

22

Integrated Systems Biology Analysis Reveals Contrasting Role for Innate Immune Response Genes in Conferring Risk of Infection in RV144 Trial

Filali-Mouhim, Ali, Fourati, Slim, Lefebvre, Francois, Thomas, Rasmi, Gottardo, Raphael, Frahm, Nicole, De Rosa, Stephen, Wilkinson, Peter, Stafova, Petra, Sabnis, Amit, Kaewkungwal, Jaranit, Pitisutt

Journal:

AIDS Research and Human Retroviruses

Year:

2014

Language:

english

File:

PDF, 90 KB

english, 2014

23

Markov Chain Monte Carlo With Mixtures of Mutually Singular Distributions

Raphael Gottardo and Adrian E. Raftery

Journal:

Journal of Computational and Graphical Statistics

Year:

2008

Language:

english

File:

PDF, 2.18 MB

english, 2008

24

Bayesian Robust Inference for Differential Gene Expression in Microarrays with Multiple Samples

Raphael Gottardo, Adrian E. Raftery, Ka Yee Yeung and Roger E. Bumgarner

Journal:

Year:

2006

Language:

english

File:

PDF, 2.10 MB

english, 2006

25

CD32 + and PD-1 + Lymph Node CD4 T Cells Support Persistent HIV-1 Transcription in Treated Aviremic Individuals

Noto, Alessandra, Procopio, Francesco A., Banga, Riddhima, Suffiotti, Madeleine, Corpataux, Jean-Marc, Cavassini, Matthias, Fenwick, Craig, Gottardo, Raphael, Perreau, Matthieu, Pantaleo, Giuseppe

Journal:

Journal of Virology

Year:

2018

Language:

english

File:

PDF, 4.69 MB

english, 2018

26

Critical assessment of automated flow cytometry data analysis techniques

Aghaeepour, Nima, Finak, Greg, Hoos, Holger, Mosmann, Tim R, Brinkman, Ryan, Gottardo, Raphael, Scheuermann, Richard H

Journal:

Year:

2013

Language:

english

File:

PDF, 76 KB

english, 2013

27

Correction for Hraber et al., “Panels of HIV-1 Subtype C Env Reference Strains for Standardized Neutralization Assessments”

Hraber, Peter, Rademeyer, Cecilia, Williamson, Carolyn, Seaman, Michael S., Gottardo, Raphael, Tang, Haili, Greene, Kelli, Gao, Hongmei, LaBranche, Celia, Mascola, John R., Morris, Lynn, Montefiori, D

Journal:

Journal of Virology

Year:

2018

Language:

english

File:

PDF, 80 KB

english, 2018

28

Recent Bioinformatics Advances in the Analysis of High Throughput Flow Cytometry Data

Gottardo, Raphael, Brinkman, Ryan R., Luta, George, Wand, Matt P.

Journal:

Advances in Bioinformatics

Year:

2009

Language:

english

File:

PDF, 1.03 MB

english, 2009

29

Comprehensive Sieve Analysis of Breakthrough HIV-1 Sequences in the RV144 Vaccine Efficacy Trial

Edlefsen, Paul T., Rolland, Morgane, Hertz, Tomer, Tovanabutra, Sodsai, Gartland, Andrew J., deCamp, Allan C., Magaret, Craig A., Ahmed, Hasan, Gottardo, Raphael, Juraska, Michal, McCoy, Connor, Larse

Journal:

AIDS Research and Human Retroviruses

Year:

2014

Language:

english

File:

PDF, 88 KB

english, 2014

30

Comprehensive Sieve Analysis of Breakthrough HIV-1 Sequences in the RV144 Vaccine Efficacy Trial

Edlefsen, Paul T., Rolland, Morgane, Hertz, Tomer, Tovanabutra, Sodsai, Gartland, Andrew J., deCamp, Allan C., Magaret, Craig A., Ahmed, Hasan, Gottardo, Raphael, Juraska, Michal, McCoy, Connor, Larse

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 4.76 MB

english, 2015

31

Modeling Bi-modality Improves Characterization of Cell Cycle on Gene Expression in Single Cells

McDavid, Andrew, Dennis, Lucas, Danaher, Patrick, Finak, Greg, Krouse, Michael, Wang, Alice, Webster, Philippa, Beechem, Joseph, Gottardo, Raphael, Zhong, Sheng

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 924 KB

english, 2014

32

Combined single-cell quantitation of host and SIV genes and proteins ex vivo reveals host-pathogen interactions in individual cells

Bolton, Diane L., McGinnis, Kathleen, Finak, Greg, Chattopadhyay, Pratip, Gottardo, Raphael, Roederer, Mario, Cullen, Bryan R.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.55 MB

english, 2017

33

Automated analysis of flow cytometry data comes of age

Brinkman, Ryan R., Aghaeepour, Nima, Finak, Greg, Gottardo, Raphael, Mosmann, Tim, Scheuermann, Richard H.

Journal:

Cytometry Part A

Year:

2016

Language:

english

File:

PDF, 69 KB

english, 2016

34

Analysis of V2 Antibody Responses Induced in Vaccinees in the ALVAC/AIDSVAX HIV-1 Vaccine Efficacy Trial

Zolla-Pazner, Susan, deCamp, Allan C., Cardozo, Timothy, Karasavvas, Nicos, Gottardo, Raphael, Williams, Constance, Morris, Daryl E., Tomaras, Georgia, Rao, Mangala, Billings, Erik, Berman, Phillip, S

Journal:

Year:

2013

Language:

english

File:

PDF, 902 KB

english, 2013

35

A Flexible and Powerful Bayesian Hierarchical Model for ChIP-Chip Experiments

Raphael Gottardo, Wei Li, W. Evan Johnson and X. Shirley Liu

Journal:

Year:

2008

Language:

english

File:

PDF, 3.19 MB

english, 2008

36

High-throughput flow cytometry data normalization for clinical trials

Finak, Greg, Jiang, Wenxin, Krouse, Kevin, Wei, Chungwen, Sanz, Ignacio, Phippard, Deborah, Asare, Adam, De Rosa, Stephen C., Self, Steve, Gottardo, Raphael

Journal:

Cytometry Part A

Year:

2014

Language:

english

File:

PDF, 1.08 MB

english, 2014

37

T cell-dependent affinity maturation and innate immune pathways differentially drive autoreactive B cell responses in rheumatoid arthritis

Lu, Daniel R., McDavid, Andrew N., Kongpachith, Sarah, Lingampalli, Nithya, Glanville, Jacob, Ju, Chia-Hsin, Gottardo, Raphael, Robinson, William H.

Journal:

Arthritis & Rheumatology

Year:

2018

Language:

english

File:

PDF, 1.41 MB

english, 2018

38

State-of-the-Art in the Computational Analysis of Cytometry Data

Brinkman, Ryan R., Aghaeepour, Nima, Finak, Greg, Gottardo, Raphael, Mosmann, Tim, Scheuermann, Richard H.

Journal:

Cytometry Part A

Year:

2015

Language:

english

File:

PDF, 78 KB

english, 2015

39

An Integrated Hierarchical Bayesian Model for Multivariate eQTL Mapping

Scott-Boyer, Marie Pier, Imholte, Gregory C., Tayeb, Arafat, Labbe, Aurelie, Deschepper, Christian F., Gottardo, Raphael

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2012

Language:

english

File:

PDF, 856 KB

english, 2012

40

Probabilistic Inference for Nucleosome Positioning with MNase-Based or Sonicated Short-Read Data

Zhang, Xuekui, Robertson, Gordon, Woo, Sangsoon, Hoffman, Brad G., Gottardo, Raphael, Esteban, Francisco José

Journal:

Year:

2012

Language:

english

File:

PDF, 718 KB

english, 2012

41

Bayesian robust transformation and variable selection: a unified approach

Raphael GOTTARDO and Adrian RAFTERY

Journal:

Canadian Journal of Statistics

Year:

2009

Language:

english

File:

PDF, 1.93 MB

english, 2009

42

Aggregating transcript-level analyses for single-cell differential gene expression

Becht, Etienne, Zhao, Edward, Amezquita, Robert, Gottardo, Raphael

Journal:

Year:

2020

File:

PDF, 2.67 MB

2020

43

Evaluation of the host transcriptional response to human cytomegalovirus infection

Challacombe, Jean F., Rechtsteiner, Andreas, Gottardo, Raphael, Rocha, Luis M., Browne, Edward P., Shenk, Thomas, Altherr, Michael R., Brettin, Thomas S.

Journal:

Physiological Genomics

Year:

2004

Language:

english

File:

PDF, 531 KB

english, 2004

44

Bayesian Robust Inference for Differential Gene Expression in Microarrays with Multiple Samples

Raphael Gottardo, Adrian E. Raftery, Ka Yee Yeung, Roger E. Bumgarner

Journal:

Year:

2006

Language:

english

File:

PDF, 520 KB

english, 2006

45

flowClust: a Bioconductor package for automated gating of flow cytometry data

Kenneth Lo, Florian Hahne, Ryan R Brinkman, Raphael Gottardo

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 495 KB

english, 2009

46

[IEEE 2009 3rd International Conference on Bioinformatics and Biomedical Engineering (iCBBE) - Beijing, China (2009.06.11-2009.06.13)] 2009 3rd International Conference on Bioinformatics and Biomedical Engineering - An MM-Based Optimization Algorithm for Sparse Linear Modeling on Microarray Data Analysis

Chen, Xiaohui, Gottardo, Raphael

Year:

2009

Language:

english

File:

PDF, 833 KB

english, 2009

47

CytoML for cross‐platform cytometry data sharing

Finak, Greg, Jiang, Wenxin, Gottardo, Raphael

Journal:

Cytometry Part A

Year:

2018

File:

PDF, 1.63 MB

2018

48

Highly multiplexed quantitation of gene expression on single cells

Dominguez, Maria H., Chattopadhyay, Pratip K., Ma, Steven, Lamoreaux, Laurie, McDavid, Andrew, Finak, Greg, Gottardo, Raphael, Koup, Richard A., Roederer, Mario

Journal:

Journal of Immunological Methods

Year:

2013

Language:

english

File:

PDF, 1.19 MB

english, 2013

49

Identification and visualization of multidimensional antigen-specific T-cell populations in polychromatic cytometry data

Lin, Lin, Frelinger, Jacob, Jiang, Wenxin, Finak, Greg, Seshadri, Chetan, Bart, Pierre-Alexandre, Pantaleo, Giuseppe, McElrath, Julie, DeRosa, Steve, Gottardo, Raphael

Journal:

Cytometry Part A

Year:

2015

Language:

english

File:

PDF, 3.19 MB

english, 2015

50

A Functional TOLLIP Variant is Associated with BCG-Specific Immune Responses and Tuberculosis.

Shah, Javeed A, Musvosvi, Munyaradzi, Shey, Muki, Horne, David J, Wells, Richard D., Peterson, Glenna J, Cox, Jeffery S., Daya, Michelle, Hoal, Eileen G, Lin, Lin, Gottardo, Raphael, Hanekom, Willem A

Journal:

American Journal of Respiratory and Critical Care Medicine

Year:

2017

Language:

english

File:

PDF, 1.82 MB

english, 2017

To build up a library is to create a life. It’s never just a random collection of books.

— Carlos María Domínguez

Official channel

Z-Library Desktop Launcher

Z-Library Since 2009 support@1delivery.pm

EnglishРусскийEspañolItalianoελληνικάاللغة العربيةBahasa IndonesiaBahasa Malaysiaहिन्दीDeutschFrançaisPortuguêsУкраїнськаPolski中文繁體中文日本語Tiếng ViệtAzərbaycan DiliՀայոց լեզուภาษาไทยTürk Diliქართველიবাংলাپښتوతెలుగుاردو한국어SrpskiБългарски